Biochemistry 158/258

Genomics, Bioinformatics & Medicine

Doug Brutlag

Bioprospector

MDScan

CompareProspector

MotifCut

Melina II

WebMotif

• ENCODE RFAs Expand Effort to Understand the Genome
  October 5, 2011

• Funding Now Available for Technology Development to Catalog and Analyze Function of Genomes
  May 25, 2011

• New user's guide and tutorial helps disease researchers interpret human genome
  April 19, 2011

• Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis

Hanlee, Ji, Lee et al, BMC Medical Genomics 2013, vol 6, 54.

 

Affymetrix

Arrayit Corporation

Biocarta Cell Signaling Pathways

miRBASE

miRNA Target Database MicroCom

PathWork Diagnostics

miRBase: http://www.mirbase.org/

MicroCosm: http://www.ebi.ac.uk/enright-srv/microcosm/

miRNAminer: http://groups.csail.mit.edu/pag/mirnaminer

miRviewer: http://people.csail.mit.edu/akiezun/miRviewer

Patrocles: http://www.patrocles.org/

TargetRank: http://hollywood.mit.edu/targetrank

TargetScanS: http://www.targetscan.org

Lectures only available to Stanford Students

Henry Stewart Talks

Accessing and Using ENCODE Data (44 mins)  Prof. Peggy Farnham  –  University of California in Davis, USA

The basal transcription machinery for RNA polymerase II (42 mins)  Prof. H. T. Marc Timmers  –  University of Utrecht, the Netherlands

Genome-wide organization of chromatin and the transcription machinery (48 mins)  Prof. Frank Pugh  –  Pennsylvania State University

The Myc transcription factor network (47 mins)  Prof. Robert N. Eisenman  –  Fred Hutchinson Cancer Research Center, USA

Role of polycomb proteins in gene transcription, stem cell and human diseases Prof. Luciano Di Croce  –  Center for Genomic Regulation

Heterochromatin, epigenetics and gene expression (51 mins)  Prof. Joel C. Eissenberg  –  Saint Louis University, USA

Histone dynamics, heritability and variants (38 mins)  Dr. Genevieve Almouzni  –  Curie Institute/CNRS, France

Enhancer malfunction in cancer (41 mins)  Dr. Ali Shilatifard  –  Stowers Institute, USA

Medical Grand Rounds

Roger Kornberg, Professor of Structural Biology, Nobel Laureate - Transcription in Development and Disease